species:   Scscl
pid:       PID1629
parent:    Ssc-milR-105
paralog:   
locus:     NW_001820823.1:140821-140906
matures:   ['UGUGGACCUUCGAUUCGUAUGG', 'CUGAAUAUGCAGGGUCCAUCACGUGA']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820823.1:140821-140906

6 out of bounds
6 alignments
5 proper strand
4 stranded perfect matches

        ************************               ****************************           
CCUGAGAGUUUGUGGACCUUCGAUUCGUAUGGACCUACGAUUCGUAUCCCUGAAUAUGCAGGGUCCAUCACGUGACUUGGAUCAGA
.((((((((((((((((((((((((((...(((..((((...))))))).))))).)).)))))))).))...)))))...)))).
----------UGUGGACCUUCGAUUCGUAUGG------------------------------------------------------ l=22 a=1 c
-------------------------------------------------CUGAAUAUGCAGGGUCCAUCACGUGA----------- l=26 a=0 c*
----------UGUGGACCUUCGAUUCGUAUGG------------------------------------------------------ l=22 a=1 ma
-------------------------------------------------CUGAAUAUGCAGGGUCCAUCACGUGA----------- l=26 a=0 ma*

------------------------------------------------------UAUGCAGGGUCCAUCACGUGA----------- l=21 a=1 
-------------------UCGAUUCGUAcGGACCUACGAU--------------------------------------------- l=22 a=1 
------------------UUCGAUUCGUAUGGACCUACGAU--------------------------------------------- l=23 a=1 
------------UGGACCUUCGAUUCGUAUGGAC---------------------------------------------------- l=22 a=1 
----------UGUGGACCUUCGAUUCGUAUGG------------------------------------------------------ l=22 a=1 (c,ma)

mb-00111
ax-1011011
ku-01
ss-110111111000
fn-011
